Biological Systems Lab: Publications (By Year)

NOTE : This list is frozen at early 2011 due to the migration to a new publications database system, and will be updated in due course. For more information about current publications, please consult the relevant group members directly.

Publications sorted by year for the Biological Systems Lab. A list sorted by publication type and an index for all research groups are also available.

2011

| 2011 | 2010 | 2009 | 2008 | 2007 | 2006 | 2005 | 2004 | 2003 | 2002 | 2001 | 2000 | 1999 |

  • Brittain J-S, Halliday DM, Optimal spectral tracking - adapting to dynamic regime change. 10.1016/j.jneumeth.2010.11.017., Journal of Neuroscience Methods, 195:111-115, 2011

2010

| 2011 | 2010 | 2009 | 2008 | 2007 | 2006 | 2005 | 2004 | 2003 | 2002 | 2001 | 2000 | 1999 |

  • Peraza LR and Halliday DM, Fourier Bayesian Information Criterion for network structure and causality estimation., Proc IEEE conference on Signals and Electronic Systems (ICSES 2010), 33-36, 2010
  • Peraza LR and Halliday DM, A fast dynamic Bayesian network algorithm for structure learning using a time-lagged partial correlation matrix, Proc IEEE conference on Signals and Electronic Systems (ICSES 2010), 25-28, 2010
  • M. A. Lones and S. L. Smith, Objective Assessment of Visuo-spatial Ability using Implicit Context Representation Cartesian Genetic Programming -Genetic and Evolutionary Computation: Medical Applications, Wiley, 2010
  • M. A. Lones, S. L. Smith, A. T. Harris, A. S. High, S. E. Fisher, D. A. Smith and J. Kirkham, Discriminating Normal and Cancerous Thyroid Cell Lines using Implicit Context Representation Cartesian Genetic Programming, World Congress on Computational Intelligence (WCCI) 2010, Barcelona, 2010
  • Halliday DM & Farmer SF, On the Need for Rectification of Surface EMG. 10.1152/jn.00222.2010, Journal of Neurophysiology, 103:3547-3547, 2010
  • Jason H. Moore, Elena Marchiori, Marylyn Ritchie, Artificial Evolution Methods in the Biological and Biomedical Sciences, Journal of Artificial Evolution and Applications, 1687-6229, 2010

2009

| 2011 | 2010 | 2009 | 2008 | 2007 | 2006 | 2005 | 2004 | 2003 | 2002 | 2001 | 2000 | 1999 |

  • A.T. Harris, A. Lungari, C.J. Needham, S.L. Smith, M.A. Lones, S.E. Fisher, X. B. Yang, N. Cooper, J. Kirkham, D.A. Smith, D.P. Martin-Hirsch and A.S. High, Potential for Raman Spectroscopy to Provide Cancer Screening Using a Peripheral Blood Sample, Head & Neck Oncology, 1(34)September, 2009
  • S. L. Smith and M. A. Lones, Implicit Context Representation Cartesian Genetic Programming for the Assessment of Visuo-Spatial Ability, IEEE Congress on Evolutionary Computation 2009, Trondheim, Norway, May, 2009
  • Khan GM, Miller JF & Halliday DM, Intelligent agents capable of developing memory of their environment. -Advances in Modeling Adaptive and Cognitive Systems (eds Loula A. & Queiroz J)., e-book available from: http://www2.uefs.br/graco/amacs/, 978-85-7395-194-3, 2009
  • Brittain J-S, Halliday DM, Cation, C, Conway BA, Nielsen JB, Jenkinson N, Optimal spectral tracking - with application to speed dependent neural modulation of tibialis anterior during human treadmill walking. 10.1016/j.jneumeth.2008.10.028., Journal of Neuroscience Methods, 177:334-347, 2009
  • Halliday DM, Rosenberg JR, Rigas A and Conway BA, A periodogram-based test for weak stationarity and consistency between sections time series. 10.1016/j.jneumeth.2009.03.009, Journal of Neuroscience Methods., 180:138-146, 2009
  • Khan GM, Miller JFM and Halliday DM, In Search Of Intelligent Genes: The Cartesian Genetic Programming Computational Neuron (CGPCN), IEEE Proceedings: CEC 2009, 574 – 581, 2009
  • J.A. Walker, K. Voelk, S.L. Smith and J.F. Miller, Parallel Evolution using Multi-chromosome Cartesian Genetic Programming, GPEM: Special Issue on Parallel and Distributed Evolutionary Algorithms, 10(4):417-445, 2009

2008

| 2011 | 2010 | 2009 | 2008 | 2007 | 2006 | 2005 | 2004 | 2003 | 2002 | 2001 | 2000 | 1999 |

  • Smith, S.L. and Timmis, J., An immune network inspired evolutionary algorithm for the diagnosis of Parkinson’s disease, BioSystems, 94(-1):34-46, 0303-24647, October-Nove, 2008
  • Khan G. M., Halliday D. M., Miller J. F., Emergent Instinctive Behaviour in Evolved Neuro-inspired Agents., SBIA/SBRN/JRI Joint Conference, Brazil, October, 2008
  • Stephen L. Smith, Andrew Greensted, Jon Timmis, Hardware Acceleration of an Immune Network Inspired Evolutionary Algorithm for Medical Diagnosis, 8th International Conference on Evolvable Systems, 34-46, Prague, Czech Republic, September, 2008
  • James L.M., Halliday D.M., Stephens J.A. and Farmer S.F., On the development of human corticospinal oscillations: Age related changes in EEG-EMG Coherence and Cumulant. 10.1111/j.1460-9568.2008.06277.x., European Journal of Neuroscience, 27:3369–3379, 2008
  • Nielsen JB, Brittain J-S, Halliday DM, Marchand-Pauvert V, Mazevet D, Conway BA, Reduction of common motoneuronal drive on the affected side during walking in hemiplegic stroke patients 10.1016/j.clinph.2008.07.283 Accompanied by editorial)., Clinical Neurophysiology, 119:2813-2818, 2008
  • Stevenson CW, Halliday DM, Marsden CA, Mason R., Early life programming of hemispheric lateralization and synchronization in the adult medial prefrontal cortex. 10.1016/j.neuroscience.2008.06.013., Neuroscience, 155:852-863, 2008
  • Mokhtar, M., Halliday, D.M. and Tyrrell, A.M., Hippocampus-Inspired Spiking Neural Network on FPGA. 10.1007/978-3-540-85857-7_32, International Conference on Evolvable Systems, 362-371, Lecture Notes in Computer Scie, 2008
  • Khan G. M., Halliday D. M., Miller J. F., Coevolution of neuro-developmental programs that play checkers, Evolvable Systems: From Biology to Hardware., 352-361, Prague, Czech Republic, 2008

2007

| 2011 | 2010 | 2009 | 2008 | 2007 | 2006 | 2005 | 2004 | 2003 | 2002 | 2001 | 2000 | 1999 |

  • Barker, W., Halliday, D.M., Thoma, Y., Sanchez, E., Tempesti, G., and Tyrrell, A. M., Fault Tolerance using Dynamic Reconfiguration on the POEtic Tissue, IEEE Transactions on Evolutionary Computation, 11(5):666-684, 1089-778X, October, 2007
  • Mokhtar, M., Halliday, D.M., and Tyrrell, A.M., Hippocampus Neurons and Place Cells/Place Field Representation to Provide Path Navigation, International Conference on Neural Networks, Orlando, August, 2007
  • Farmer S.F., Gibbs J., Halliday D.M., Harrison L.M., James L.M., Mayston M.J., and Stephens J.A., Changes in EMG coherence between long and short thumb abductor muscles during human development., Journal of Physiology 10.1113/jphysiol.2006.123174, 579(2):389-402, March, 2007
  • D.P. Allen, J.R. Playfer, N.M. Aly, P. Duffey, A. Heald, S.L. Smith, D.M. Halliday, On the use of low-cost computer peripherals for the assessment of motor dysfunction in Parkinson’s disease – Quantification of bradykinesia using target tracking tasks. 10.1109/TNSRE.2007.897020, IEEE Transactions on Neural Systems & Rehabilitation Engineering, 15:286-294, 2007
  • S. L. Smith, P. Gaughan, D. M. Halliday, Q. Ju, N. M. Aly and J. R. Playfer, Diagnosis of Parkinson's disease using evolutionary algorithms, Genetic Programming and Evolvable Machines, 8(4):433 - 447, 1389-2576, 2007
  • Aly, N. M., Playfer, J. R., Smith, S. L. and Halliday, D. M., A novel computer-based technique for the assessment of tremor in Parkinson's disease, Age and Ageing, 36(4):395-399, 0002-0729, 2007
  • Khan G. M., Halliday D. M., Miller J. F., Coevolution of Intelligent Agents using Cartesian GeneticProgramming, Genetic and Evolutionary Computation Conference, 269-276, London, 2007
  • Stevenson CW, Halliday DM, Marsden CA, Mason R., Systemic administration of the benzodiazepine receptor partial inverse agonist FG-7142 disrupts corticolimbic network interactions. 10.1002/syn.20414, Synapse, 61:646–663, 2007
  • Griffin M. & Halliday D.M., Temporal sub units in dendritic trees. Biosystems, Biosystems, 87:172–178., 2007

2006

| 2011 | 2010 | 2009 | 2008 | 2007 | 2006 | 2005 | 2004 | 2003 | 2002 | 2001 | 2000 | 1999 |

  • Stephen L. Smith, Patrick Gaughan, David M. Halliday, Quan Ju, Nabil M. Aly, Jeremy R. Playfer, The Application of Evolutionary Algorithms towards the Diagnosis of Parkinson's Disease, Genetic and Evolutionary Computation Conference, Seattle, USA, July, 2006
  • Cavill, R., Smith, S.L. and Tyrrell, A.M., Variable Length Genetic Algorithm with Multiple Chromosomes on a Variant of the One-max Problem, GECCO, 1405-1406, Seattle, July, 2006
  • Allen, D., Halliday, D.M., and Tyrrell, A.M., A hybrid Bio-inspired System: Hardware Spiking Neural Network Incorporating Hebbian Learning with Microprocessor based Evolutionary Control Algorithm, IEEE Congress on Evolutionary Computation, 10315-10322, Vancouver, Canada, July, 2006
  • Xinye Cai, Smith, S.L. and Tyrrell, Positional Independence and Recombination in Cartesian Genetic Programming, European Conference on Genetic Programming (EuroGP), 351-360, Budapest, Hungary, April, 2006
  • Halliday, D.M., Rosenberg, J.R., Breeze, P. & Conway, B.A., Neural Spike Train Synchronisation Indices: Definitions, Interpretations and Applications. IEEE Transactions Biomedical Engineering. 10.1109/TBME.2006.871886., IEEE Trans BME, 53:1056-1066, 2006
  • Brittain J., Halliday D.M., Conway B.A. & Nielsen J.B., Single-trial multi-wavelet coherence in application to neurophysiological time series., IEEE Transactions Biomedical Engineering, In Press10.1109/TBME.2006.88, 2006
  • Zhan, Y., Halliday, D.M., Liu, X. and Feng, J., Detecting time-dependent coherence between non-stationary electrophysiological signals - A combined statistical and time-frequency approach., Journal of Neuroscience Methods, 156:322-332, 2006
  • Julian F. Miller and S. L. Smith, Redundancy and Computational Efficiency in Cartesian Genetic Programming, IEEE Transaction on Evolutionary Computation, 10(2):167-174, 2006
  • Brittain J., Halliday D.M., Conway B.A. & Nielsen J.B., Single-trial multi-wavelet coherence in locomotion studies., FENS 2006 (submitted), 2006

2005

| 2011 | 2010 | 2009 | 2008 | 2007 | 2006 | 2005 | 2004 | 2003 | 2002 | 2001 | 2000 | 1999 |

  • Richard O. Canham, Stephen L. Smith and Andy M. Tyrrell, Location of Structural Sections from within a Highly Distorted Complex Line Drawing, IEE Proc. Vision, Image & Signal Processing, 152(6):741-749, 1350-245X, December, 2005
  • Rodney Fry, Stephen Smith and Andy Tyrrell, A Self-Adaptive Mate Selection Model for Genetic Programming, IEEE Congress on Evolutionary Computation (CEC 2005), 2707-2714, Edinburgh, 0-7803-9363-5, September, 2005
  • Xinye Cai, Smith, S.L. and Tyrrell, A.M., Positional Independence and Recombination in Cartesian Genetic Programming, 6th International Conference on Evolvable Systems (ICES 2005), 143-154, Sitges, Spain, 3-540-28736-1, September, 2005
  • Rachel Cavill, Stephen L Smith and Andy M Tyrrell, Multi­chromosomal Genetic Programming, Genetic and Evolutionary Computation Conference (GECCO), 1753-1759, Washington D.C., 1-59593-010-8, June, 2005
  • Sengupta, B. & Halliday, D.M., Neuronal Dynamics of Dynamic Synapses., IEEE EMBS, 2005., 2005
  • Hansen N.L. , Conway B.A., Halliday D.M., Hansen S., Pyndt H.S., Biering-Sørensen F. & Nielsen J.B., Reduction of common synaptic drive to ankle dorsiflexor motoneurones during walking in patients with spinal cord lesion, Journal of Neurophysiology, 94(2):934-942, 2005
  • Nielsen J.B., Conway B.A., Halliday D.M., Perreault M-C. and Hultborn H., Organization of common synaptic drive to motoneurones during fictive locomotion in the spinal cat, Journal of Physiology, 569:291-304, 2005
  • Halliday, D.M. (2005), Temporal subunits in branching dendritic structures. Program No. 274.12. 2005 Abstract Viewer/Itinerary Planner. Washington, DC:, Society for Neuroscience., 2005
  • Halliday, D.M., Spike train analysis for neural systems. (Invited chapter) -Modelling in the Neurosciences (2nd edition) Eds: Reeke et al., CRC Press, 0415328683, 2005
  • Stephen L Smith, Stefan Leggett and Andrew M. Tyrrel, An Implicit Context Representation for Evolving Image Processing Filters, EvoWorkshops2005, 407-416, Lausanne, Switzerland, 3-540-25396-3, 2005
  • C.W.Stevenson, D.M.Halliday, C.A.Marsden, R.Mason., Effects of early maternal separation on prefrontal cortex and amygdala neural activity in response to stress in the adult rat Program No. 446.4. 2005 Abstract Viewer/Itinerary Planner. Washington, DC:, Society for Neuroscience, 2005
  • Allen, D.P., Halliday, D.M., Smith, S., Playfer, J. & Aly, N., A clinical diagnostic tool for the assessment of bradykinesia in Parkinson’s disease using using low cost computer peripherals., Institute of Physics and Engineering in Medicine, Annual Scientific Meeting, P34, 2005

2004

| 2011 | 2010 | 2009 | 2008 | 2007 | 2006 | 2005 | 2004 | 2003 | 2002 | 2001 | 2000 | 1999 |

  • Zhang, Y., Smith, S.L. and Tyrrell, A.M., Digital Circuit Design using Intrinsic Evolvable Hardware, 5th NASA Conference on Evolvable Hardware, Seattle, June, 2004
  • Zhang, Y., Smith, S.L. and Tyrrell, A.M. pp., Digital Circuit Design using Intrinsic Evolvable Hardware, Coimbra, Portugal, April, 2004
  • Griffin M. & Halliday D.M., Axial current reversal promotes synchronous correlation between dendritic membrane potentials during large scale synaptic input (Conference paper), NeuroComputing, 58-60:423-430, 2004
  • Cunningham, M.O., Halliday, D.M., Davies, C.H., Traub, R.D., Buhl, E.H., Whittington M.A., Coexistence of gamma and high-frequency oscillations in the medial entorhinal cortex in vitro., Journal of Physiology, 559:347-353, 2004
  • Conway B.A., Reid C. & Halliday D.M, Low Frequency Cortico-Muscular Coherence During Voluntary Rapid Movements of the Wrist Joint (Conference Paper), Brain Topography, 16(4):221-224, 2004

2003

| 2011 | 2010 | 2009 | 2008 | 2007 | 2006 | 2005 | 2004 | 2003 | 2002 | 2001 | 2000 | 1999 |

  • Smith, S.L., Crouch, D.P. and Tyrrell, A.M., Evolving Image Processing Operations for an Evolvable Hardware Environment, 5th International Conference on Evolvable Systems, 332-343, Trondheim, March, 2003
  • Griffin, M. & Halliday, D.M., on the role of dendritic feedback in synaptic integration, British Neuroscience Association, 107, 2003
  • Halliday, DM, Conway, BA, Christensen, LOD, Hansen S, Hansen NL , Petersen, NP & Nielsen JB, Functional coupling of motor units is modulated during walking in human subjects., Journal of Neurophysiology, 89:960-968, 2003

2002

| 2011 | 2010 | 2009 | 2008 | 2007 | 2006 | 2005 | 2004 | 2003 | 2002 | 2001 | 2000 | 1999 |

  • Nielsen, J.B., Conway, B.C., Halliday, D.M., Perreault, M.C., Hultborn, H., Coupling of Neurogram activity during fictive locomotion in the cat., Society for Neuroscience, Program No., 2002

2001

| 2011 | 2010 | 2009 | 2008 | 2007 | 2006 | 2005 | 2004 | 2003 | 2002 | 2001 | 2000 | 1999 |

  • Tyrrell, A.M., Hollingworth, G. and Smith, S.L., Evolutionary Strategies and Intriinsic Fault Tolerance, 3rd NASA/DoD Workshop on Evolvable Hardware, 98-106, Long Beach, July, 2001
  • Shahani, U., Lang, G., Mansfield, D.C., Halliday, D.M., Weir, A.I, Maas, P. & Donaldson, G.B., Magnetoencephalography and stereopsis: rhythmic cortical activity in humans recorded over the parieto-occipital cortex., Neuroscience Letters, 315:154-158, 2001
  • Halliday, D.M., Temporal coding in neuronal populations in the presence of significant electrotonic dendritic conduction times. -Emergent Neural Computational Architectures, (Eds. Wermter, S., Willshaw, D. & Austin, J.), Springer-Verlag,, 2001

2000

| 2011 | 2010 | 2009 | 2008 | 2007 | 2006 | 2005 | 2004 | 2003 | 2002 | 2001 | 2000 | 1999 |

  • Scowen, B.C., Smith, S.L. and Vannan, M.A., Quantitative 3D Modelling of the Left Ventrical from Ultrasound Images, 26th Euromicro Conference, Workshop on Medical Informatics, 432-439, Maastricht, 0-7695-0780-8, September, 2000
  • Canham, R.O., Smith, S.L. and Tyrrell, A.M., Recognition and Grading of Severely Distorted Geometric Shapes from within a Complex Figure, 26th Euromicro Conference, Workshop on Medical Informatics, 406-413, Maastricht, September, 2000
  • Ortega, C., Mange, D., Smith, S.L. and Tyrrell, A.M., Embryonics: A Bio-Inspired Cellular Architecture with Fault-Tolerant Properties, Journal of Genetic Programming and Evolvable Machines, 1(3):187-215, July, 2000
  • Hollingworth, G., Smith, S.L. and Tyrrell, A.M., The Evolution of an XC6200 Architecture in a Virtex Device, 2nd NASA/DoD Workshop on Evolvable Hardware, 195-202, Silicon Valley, July, 2000
  • Hollingworth, G.S., Smith, S.L. and Tyrrell, A.M., The Intrinsic Evolution of Virtex Devices through Internet Reconfigurable Logic, 3rd International Conference on Evolvable Systems: from Biology to Hardware, 72-79, Edinburgh, April, 2000
  • Halliday, D.M. & Rosenberg, J.R., On the application, estimation and interpretation of coherence and pooled coherence., Journal of Neuroscience Methods, 100:173-174, 2000
  • Halliday, D.M., Temporal correlation of large scale synaptic input is a major determinant of neuronal bandwidth, Neural Computation, 12:693-707, 2000
  • Canham, R.O., Smith, S.L. and Tyrrell, A.M., Recognition and Grading of Severely Distorted Geometric Shapes from within a Complex Figure, Journal of Pattern Analysis and Applications, Springer Verlag, 3(4):355-347, 2000
  • Das, M., Howard, D.M., and Smith, S.L., The kinematic analysis of motion curves through MIDI data analysis, Organised Sound, 5(1):137-145, 1355-7718, 2000
  • Halliday, D.M., Conway, B.A., Farmer, S.F., Shahani, U., Russell, A. & Rosenberg, J.R., Coherence between low-frequency activation of the motor cortex and tremor in patients with essential tremor, The Lancet, 355:1149-1153, 2000
  • Halliday, D.M., Hansen, N.L., Christensen, L.O.D., Petersen, N.T., Conway, B.A. & Nielsen J.B., Time/frequency analysis of EMG signals recorded from the anterior tibial muscle during human walking., FENS 2000, 198, 2000

1999

| 2011 | 2010 | 2009 | 2008 | 2007 | 2006 | 2005 | 2004 | 2003 | 2002 | 2001 | 2000 | 1999 |

  • Garbi, A., Smith, S.L., Thompson, P. and Heseltine, D., Automated and Enhanced Assessment of Visual Neglect, Seventh International Conference on Image Processing and its Applications, 382-386, Manchester, U.K., 0-85296-717-9, July, 1999
  • Hollingworth, G.S., Tyrrell, A.M. and Smith, S.L., Simulation of Evolvable Hardware to Solve Low Level Image Processing Tasks, First European Workshop on Evolutionary Computation in Image Analysis and Signal Processing, 46-58, Sweden, May, 1999
  • Hollingworth, G.S., Smith, S.L. and Tyrrell, A.M., Design of highly parallel edge detection nodes using evolutionary techniques, Seventh Euromicro Workshop on Parallel and Distributed Processing, 35-42, Funchal, Portugal, 0-7695-0059-5, February, 1999
  • Das, M., Howard, D.M., and Smith, S.L., Motion in music: the statistical analysis of MIDI data, IEEE/Euromicro Proceedings of the 25th Euromicro Conference, 13-19, Milan, 1999
  • Halliday, D.M. & Rosenberg, J.R., Time and frequency domain analysis of spike train and time series data. -Modern Techniques in Neuroscience Research (Eds. U. Windhorst & H. Johansson), Springer-Verlag, 1999
  • Conway, B.A., Halliday, D.M. & Rosenberg J.R. (1999) , 123,, Rhythmic cortical activity and its relation to neurogenic components of normal and pathological tremors. -Peripheral and spinal mechanisms in the neural control of movement (Ed. M.D. Binder), Elsevier, 1999
  • Lindsay, K, Ogden, J., Halliday, D.M. & Rosenberg, J.R. (1999)., An introduction to the principles of neuronal modelling. -Modern Techniques in Neuroscience Research, (Eds. U. Windhorst & H. Johansson), Springer-Verlag, 1999
  • Halliday, D.M., The role of temporal correlation amongst pre-synaptic inputs in modulating neuronal discharge., Joint meeting Société des Neurosciences/British Neuroscience Association, 50, Paris, 1999
  • Conway, B.A., Halliday, D.M., Farmer, S.F., Brontë-Stewart, H. & Rosenberg, J.R., Rhythmic cortical activity and its relation to movement in normal subjects and patients with movement disorders., Physiological society meeting, 32S-33S., 1999
  • Farmer, S.F., Conway, B.A., Halliday, D.M. & Rosenberg, J.R., Motor system integration and binding through rhythmicity and synchronization, Physiological society meeting, 3S-4S, 1999
  • Spauschus, A., Marsden, J., Halliday, D.M., Rosenberg, J.R. & Brown, P., The origin of ocular microtremor in man, Experimental Brain Research, 126:556-562, 1999
  • Arsenault, M., Avelar, E., Smith, S.L., Brittain, P, Fairhurst, M. and Vannan, M., Two-dimensional echocardiographic quantitation of left ventricular global and regional shape: Validation of an algorithm based on Fourier transformation and curvature measurements of endocardial contours, Echocardiography, 16(6):523-530, 0742-2822, 1999
  • Brown, P., Farmer, S.F., Halliday, D.M., Marsden, J. & Rosenberg, J.R., Coherent cortical and muscle discharge in cortical myoclonus., Brain, 122:461-472, 1999
  • Halliday, D.M., Conway, B.A., Farmer, S.F., & Rosenberg, J.R., Load independent contributions from motor unit synchronization to human physiological tremor., Journal of Neurophysiology, 82:664-675., 1999
  • Marsden, J., Farmer, S.F., Halliday, D.M., Rosenberg, J.R. & Brown, P., The unilateral and bilateral control of motor unit pairs in the first dorsal interosseous and paraspinal muscles., Journal of Physiology, 521:553-564, 1999

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